PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA05g12660
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 483aa    MW: 53501.2 Da    PI: 6.7195
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA05g12660genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.0001885102219
                 EETTTTEEESSHHHHHHH CS
     zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                 +C++Cgk Fs++ ++  H
  CA05g12660  85 VCENCGKEFSSWKSFLEH 102
                 6**************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.0051537IPR007087Zinc finger, C2H2
PROSITE profilePS501578.61537IPR007087Zinc finger, C2H2
SuperFamilySSF576671.94E-51537No hitNo description
SMARTSM003556.11537IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801737IPR007087Zinc finger, C2H2
SuperFamilySSF576671.94E-579103No hitNo description
SMARTSM0035518084104IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.73E-7227250No hitNo description
PfamPF139121.4E-9228252IPR007087Zinc finger, C2H2
SMARTSM003550.13228250IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076228255IPR007087Zinc finger, C2H2
PROSITE patternPS000280230250IPR007087Zinc finger, C2H2
SuperFamilySSF576677.73E-7290317No hitNo description
PfamPF139126.3E-13295318IPR007087Zinc finger, C2H2
PROSITE profilePS501579.328295317IPR007087Zinc finger, C2H2
SMARTSM003550.52295317IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280297317IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MACIDQEQQQ PIFKHYCRVC KKGFVCGRAL GGHMRAHGIG DEGANIDDDD PASDWEDKFG  60
GSVKGGNKRM YQLRTNPNRQ KSNRVCENCG KEFSSWKSFL EHGKCSSEDA ESLVSSPGSE  120
GEDYINNGGR KGYGWSKRKR SLRTKIGTIS TSTYPPSEDE DLVLAKCLID LANAKVIDMS  180
LAEPEESCAS ASKEEERARN PMNYLTPLVS TRVPFDNKAK GVSNKGLFEC KACKKVFNSH  240
QALGGHRASH KKVKGCYAAK QDQLDDSLID DQDMNITQDE FTLQGSKSMK KSKIHECSIC  300
HRVFSTGQAL GGHKRCHWIT SNSPDSTSKF NFHGHMEQIN LRSNLRKSGD ALDLNIPISH  360
EDMSRIRRDP MNPLSFEVST EIHLHPWSIN AHEAKDGENH SCSDNYYLDE NINNNNNTND  420
NGNNGNNNIN GTIQSGEDDE ADSSKLKLAK LSELQDMNKN SENPSHWLQV GIGPTTEVGA  480
NP*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016574675.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLM1AA060.0M1AA06_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000180760.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-25C2H2-like zinc finger protein